SCUD (Saccharomyces Cerevisiae Ubiquitination Database)


Main Search Enzymes Substrates Ubiquitination types BLAST Feedback HELP

Substrate Information

General Information
Standard namePRP39
Systematic nameYML046W
DescriptionPre-mRNA-processing factor 39

Ubiquitination Features
NumberSiteTypeE2E3 ClassE3 SubclassSubstrate ReceptorUbiquitin ReceptorDUBEffect
1         
* Blank: not determined, NA: not applicable.

References
[1]EvidencePurification & Protein ID
Methodpurification (6xHis-Myc-ubiquitin), LC/MS, validation (virtual Western blot)
Reference"Systematic approach for validating the ubiquitinated proteome."
Seyfried NT, Xu P, Duong DM, Cheng D, Hanfelt J, Peng J.
Anal Chem. 80(11):4161-9 (2008) [18433149]

Cross References
Swiss-Prot accessionP39682
SGD YML046W
Gene Ontology (GO)
Cellular componentGO:0000243commitment complexIGI:SGD.
Cellular componentGO:0005685snRNP U1IDA:SGD.
Biological processGO:0000395nuclear mRNA 5'-splice site recognitionIGI:SGD.
EC number  

Additional Features
Other Post Translational Modifications (PTM)  

Sequence Information
Sequence length629
Molecular weight74748

	---------+----------+----------+----------+----------+
MPDETNFTIE DIEPRPDALR GLDTQFLQDN TALVQAYRGL DWSDISSLTQ   50
MVDVIEQTVV KYGNPNDSIK LALETILWQI LRKYPLLFGF WKRFATIEYQ   100
LFGLKKSIAV LATSVKWFPT SLELWCDYLN VLCVNNPNET DFIRNNFEIA   150
KDLIGKQFLS HPFWDKFIEF EVGQKNWHNV QRIYEYIIEV PLHQYARFFT   200
SYKKFLNEKN LKTTRNIDIV LRKTQTTVNE IWQFESKIKQ PFFNLGQVLN   250
DDLENWSRYL KFVTDPSKSL DKEFVMSVFD RCLIPCLYHE NTWMMYIKWL   300
TKKNISDEVV VDIYQKANTF LPLDFKTLRY DFLRFLKRKY RSNNTLFNNI   350
FNETVSRYLK IWPNDILLMT EYLCMLKRHS FKNSLDQSPK EILEKQTSFT   400
KILETSITNY INNQIDAKVH LQTLINDKNL SIVVVELIKT TWLVLKNNMQ   450
TRKYFNLYQK NILIKNSVPF WLTYYKFEKS NVNFTKLNKF IRELGVEIYL   500
PTTVMNDILT DYKTFYLTHS NIVTYESSII DSNTFDPILY PELKMSNPKY   550
DPVLNTTANV DWHKKTEWKE AGHIGITTER PQISNSIIEC NSGTLIQKPI   600
SLPNFRNLEK INQVKINDLY TEEFLKEGK                          629