SCUD (Saccharomyces Cerevisiae Ubiquitination Database)


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Substrate Information

General Information
Standard namePBP1
Systematic nameYGR178C
AliasMRS16
DescriptionPAB1-binding protein 1

Ubiquitination Features
NumberSiteTypeE2E3 ClassE3 SubclassSubstrate ReceptorUbiquitin ReceptorDUBEffect
1         
* Blank: not determined, NA: not applicable.

References
[1]EvidencePurification & Protein ID
Methodpurification (6xHis-Myc-ubiquitin), LC/MS, validation (virtual Western blot)
Reference"Systematic approach for validating the ubiquitinated proteome."
Seyfried NT, Xu P, Duong DM, Cheng D, Hanfelt J, Peng J.
Anal Chem. 80(11):4161-9 (2008) [18433149]

Cross References
Swiss-Prot accessionP53297
SGD YGR178C
Gene Ontology (GO)
Cellular componentGO:0005739mitochondrionIDA:SGD.
Cellular componentGO:0005634nucleusIDA:SGD.
Cellular componentGO:0005844polysomeIDA:SGD.
Molecular functionGO:0005515protein bindingIPI:IntAct.
Biological processGO:0006378mRNA polyadenylationIGI:SGD.
Biological processGO:0045727positive regulation of protein biosynthetic...IMP:SGD.
EC number  

Additional Features
Other Post Translational Modifications (PTM)
Residue indexType
106Phosphoserine.
436Phosphoserine.
451Phosphoserine.

Sequence Information
Sequence length722
Molecular weight78781

	---------+----------+----------+----------+----------+
MKGNFRKRDS STNSRKGGNS DSNYTNGGVP NQNNSSMFYE NPEITRNFDD   50
RQDYLLANSI GSDVTVTVTS GVKYTGLLVS CNLESTNGID VVLRFPRVAD   100
SGVSDSVDDL AKTLGETLLI HGEDVAELEL KNIDLSLDEK WENSKAQETT   150
PARTNIEKER VNGESNEVTK FRTDVDISGS GREIKERKLE KWTPEEGAEH   200
FDINKGKALE DDSASWDQFA VNEKKFGVKS TFDEHLYTTK INKDDPNYSK   250
RLQEAERIAK EIESQGTSGN IHIAEDRGII IDDSGLDEED LYSGVDRRGD   300
ELLAALKSNS KPNSNKGNRY VPPTLRQQPH HMDPAIISSS NSNKNENAVS   350
TDTSTPAAAG APEGKPPQKT SKNKKSLSSK EAQIEELKKF SEKFKVPYDI   400
PKDMLEVLKR SSSTLKSNSS LPPKPISKTP SAKTVSPTTQ ISAGKSESRR   450
SGSNISQGQS STGHTTRSST SLRRRNHGSF FGAKNPHTND AKRVLFGKSF   500
NMFIKSKEAH DEKKKGDDAS ENMEPFFIEK PYFTAPTWLN TIEESYKTFF   550
PDEDTAIQEA QTRFQQRQLN SMGNAVPGMN PAMGMNMGGM MGFPMGGPSA   600
SPNPMMNGFA AGSMGMYMPF QPQPMFYHPS MPQMMPVMGS NGAEEGGGNI   650
SPHVPAGFMA AGPGAPMGAF GYPGGIPFQG MMGSGPSGMP ANGSAMHSHG   700
HSRNYHQTSH HGHHNSSTSG HK                                 722